The purpose of this study is to evaluate the added diagnostic value of a quantitative polymerase chain reaction targeting the lytA gene in detecting pneumococci in patients with community-acquired pneumonia.
Study Type
OBSERVATIONAL
Enrollment
922
LytA qPCR and cultures will be performed on samples of the upper respiratory tract (nasopahrynx, oropharynx, saliva, sputum if available)
Spaarne Gasthuis
Haarlem, North Holland, Netherlands
Noordwest Ziekenhuisgroep
Alkmaar, Netherlands
qPCR diagnosed pneumococcal pneumonia
Occurrence of qPCR proven pneumococcal pneumonia (CAP with S. pneumoniae detected by qPCR in at least one of the samples with a positive lytA qPCR and a DNA copy number above the determined cut-off value) using the cut-off value in at least one of the specimens at inclusion. The cut-off value will be determined in this study, see secondary objective.
Time frame: 1 day, day of inclusion
Pneumococcal pneumonia with usual tests
Occurrence of pneumococcal pneumonia proven by at least one of the routine microbiological tests (urine antigen test, blood culture and/or sputum culture). The difference between outcome measure 1 and 2 is the added diagnostic value.
Time frame: 1 day, day of inclusion
Number of DNA copies of S. pneumoniae in all lytA qPCR positive study subjects
The number of DNA copies of every study subject with a positive qPCR will be determined. The optimal cut-off value will be determined to distinguish between colonisation and infection by comparing the number of DNA copies of controls with a positive lytA PCR and patients with a pneumococcal pneumonia proven by routine microbiological tests. This cut-off value will be used for outcome measure 1 to determine the amount of patients with an qPCR proven pneumococcal pneumonia.
Time frame: 1 day, day of inclusion
Occurrence of positive lytA qPCR at 30 days after inclusion in CAP patients
Occurrence of positive lytA qPCR at 30 days after inclusion in CAP patients in the different samples: oropharynx, nasopharynx, saliva and sputum.
Time frame: 30 days
CURB-65 scores
CURB-65 scores will be determined in CAP patients at moment of inclusion.
Time frame: 1 day, day of inclusion
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Procalcitonin
Procalcitonin levels will be determined in CAP patients at moment of inclusion.
Time frame: 1 day, day of inclusion