This study aims to evaluate the role of extracellular vesicles in HIV-infection, by determining the expression profile and content of EVs before and after treatment initiation in HIV-infected patients, through extensive blood and tissue sampling (leukapheresis, stool sampling and colon biopsies). A one-time sampling (blood, stool, colon biopsies) will also be performed in HIV-seronegative healthy volunteers to confirm that results found in HIV-infected patients are related to the disease.
Study Type
OBSERVATIONAL
Enrollment
105
Ghent University Hospital
Ghent, Oost-Vlaanderen, Belgium
RECRUITINGExtracellular Vesicles analysis-NTA
Extracellular vesicles (EV) will be isolated through a combination of size-exclusion chromatography (SEC) and Optiprep density gradient (ODG). Nanoparticle Tracking Analysis (NTA) will be performed to obtain the concentration and size distribution of EVs in the samples.
Time frame: 6 years
Extracellular Vesicles analysis-microscopy
The isolated EVs will be further visualized by (electron) microscopy.
Time frame: 6 years
Extracellular Vesicles analysis-western blot
The isolated EVs will be further characterized through western blot.
Time frame: 6 years
Extracellular Vesicles analysis-PCR
The isolated EVs will be further characterized through PCR.
Time frame: 6 years
Extracellular Vesicles analysis-proteomics
The isolated EVs will be further characterized through proteomic analysis.
Time frame: 6 years
Extracellular Vesicles analysis-RNAsequencing
The isolated EVs will be further characterized through RNA sequencing.
Time frame: 6 years
Extracellular Vesicles analysis-reporter assays
Reporter assays will be performed to quantitatively measure bacterial EV-associated lipopolysaccharide (LPS).
Time frame: 6 years
Quantification of HIV DNA and RNA
Digital PCR
Time frame: 6 years
Immunological analysis-FACS
Immunophenotyping by flow cytometric assays will be performed of different cells to assess the phenotype of innate immune cells, using FACS analysis.
Time frame: 6 years
Immunological analysis-ELISA
Immunophenotyping by flow cytometric assays will be performed of different cells to assess the phenotype of innate immune cells, using ELISA.
Time frame: 6 years
Gene expression analysis/transcriptomics
Time frame: 6 years
Microbiome monitoring
Gut microbiome will be analyzed in stool and colon biopsies using next-generation sequencing (NGS) of rRNA gene amplicons to identify bacteria at genus/species level
Time frame: 6 years
Virological analysis-FLIPS
HIV will be characterized by Full Length Individual Proviral Sequencing (FLIPS).
Time frame: 6 years
Virological analysis-integration site
HIV will be characterized by integration site analysis.
Time frame: 6 years
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