This phase Ib/II trial evaluates the safety and effect of the Nous-209 vaccine in Lynch syndrome patients. Lynch syndrome is an inherited disorder in which affected individuals have a higher-than-normal chance of developing colorectal cancer and certain other types of cancer, often before the age of 50. In Lynch syndrome, errors in the genetic information inside cells are not properly corrected. When that happens, the cells produce new proteins called neoantigens. Neoantigens are recognized by the body's immune system as foreign, and the body tries to get rid of them. Nous-209 is a vaccine made with man-made copies of some of those neoantigens. This trial aims to see whether the Nous-209 vaccine is safe to give to patients with Lynch syndrome, whether people are able to take the Nous-209 vaccine without becoming too uncomfortable, and how the immune system of patients with Lynch syndrome respond to the Nous-209 vaccine. This trial may help researchers determine whether receiving Nous-209 have an effect on the development of polyps or tumors in the colon.
PRIMARY OBJECTIVES: I. To evaluate the safety and tolerability of adenoviral tumor-specific neoantigen priming vaccine GAd-209-FSP (GAd20-209-FSPs) (1 prime) and MVA tumor-specific neoantigen boosting vaccine MVA-209-FSP (MVA-209-FSPs) (1 boost) vaccination when administered as a single agent (monotherapy) in participants with Lynch syndrome (LS). II. To evaluate the neoantigen-specific immunogenicity of GAd20-209-FSPs (1 prime) and MVA-209-FSPs (1 boost) vaccination when administered as a single agent (monotherapy) in participants with LS. III. To evaluate the neoantigen-specific immunogenicity of GAd20-209-FSP prime and MVA-209-FSP boost or MVA-209-FSP boost alone when administered to previously-vaccinated immunogenic participants with LS. IV. To evaluate the safety and tolerability of GAd20-209-FSP prime and MVA-209-FSP boost or MVA-209-FSP boost alone when administered to previously vaccinated immunogenic participants with LS. SECONDARY OBJECTIVES: I. To assess the effect of Nous-209 vaccination on T cell immune profile and T cell receptor (TCR) repertoire in the peripheral blood of participants with LS. II. To assess the effect of Nous-209 vaccination on TCR repertoire within histologically normal colorectal mucosal of participants with LS. III. To evaluate the effect of Nous-209 vaccination on tumor infiltrating lymphocyte (TIL) immune profile and TCR repertoire within colorectal adenomas in participants with LS. IV. To assess the cytotoxicity of matched T cells on participant-derived colorectal adenoma organoids following Nous-209 vaccination in participants with LS. V. To evaluate the effect of Nous-209 vaccination on the burden of colorectal adenomas/advanced neoplasia/carcinoma in participants with LS. VI. To assess the effect of Nous-209 vaccination on the burden of LS-related carcinomas in participants with LS. VII. To evaluate the effect of Nous-209 vaccination on cell free deoxyribonucleic acid (DNA) (cfDNA) mutation profiles and cfDNA burden in participants with LS. VIII. To correlate tobacco and alcohol consumption with the immune response to Nous-209 in trial participants. IX. To assess the mismatch repair (MMR) and/or microsatellite instability (MSI) status of polyps (and adjacent normal mucosa as control) detected in the baseline and end-of-the-study colonoscopy using different technologies such as immunohistochemistry, MSI analysis by polymerase chain reaction (PCR), or next-generation sequencing. OUTLINE: PART I: Patients receive GAd20-209-FSPs intramuscularly (IM) on day 1 and MVA-209-FSPs IM at week 8. Patients undergo endoscopy with biopsy during screening and follow up as well as blood sample collection on the trial. PART II: Eligible patients from Part I are randomized to 1 of 2 arms. ARM A: Patients receive GAd20-209-FSPs IM at week 52 and MVA-209-FSPs IM at week 60. Patients undergo endoscopy with biopsy as well as blood sample collection on the trial. ARM B: Patients receive MVA-209-FSPs IM at week 52. Patients undergo endoscopy with biopsy as well as blood sample collection on the trial. After completion of study treatment, patients are followed up at weeks 16, 24, 36, and 52.
Study Type
INTERVENTIONAL
Allocation
RANDOMIZED
Purpose
PREVENTION
Masking
NONE
Enrollment
45
Given IM
Undergo blood sample collection
Undergo endoscopy with biopsy
Given IM
Ancillary studies
City of Hope Comprehensive Cancer Center
Duarte, California, United States
Fox Chase Cancer Center
Philadelphia, Pennsylvania, United States
M D Anderson Cancer Center
Houston, Texas, United States
University of Puerto Rico
San Juan, Puerto Rico
Rates of grade 2/3 adverse events and symptom reactivity following vaccination
Time frame: Up to 12 months
Rate of immunogenicity following vaccination (Cohort I)
Immunogenicity will be defined as reactivity to at least 1 of 16 synthetic FSP pools using an enzyme-linked immune absorbent spot (ELISpot) assay. The rate of immunogenicity induced by Nous-209 will be reported along with its 95% exact (Clopper-Pearson) confidence interval.
Time frame: Baseline and week 9
Rate of immunogenicity following revaccination (Cohort II)
Immunogenicity will be defined as reactivity to at least 1 of 16 synthetic FSP pools using an enzyme-linked immune absorbent spot (ELISpot) assay. The rate of immunogenicity induced by Nous-209 will be reported along with its 95% exact (Clopper-Pearson) confidence interval.
Time frame: Weeks 52 and at 8 weeks after the last boost with MVA-209-FSP (corresponding to week 68 and week 60, for arm A and B, respectively)
Rates of grade 2/3 adverse events and symptom reactivity following revaccination (Cohort II)
Time frame: Up to 12 months
Changes in T cell immune profile and T cell receptor (TCR) repertoire in the peripheral blood
Time frame: Baseline up to 12 months
Changes in TCR repertoire within histologically normal colorectal mucosal
Time frame: Baseline to 12 months
Changes in the gene expression profile and TCR repertoire of tumor infiltrating lymphocytes (TIL) within colorectal adenomas
Time frame: Baseline to 12 months
T cell cytotoxicity against matched colorectal adenoma organoids
Time frame: At 12 months
Percentage change in the number of colorectal adenomas, advanced neoplasia, and/or carcinomas
Will use two-sample t-test and general linear models for the comparison.
Time frame: At 12 months
Rate of Lynch syndrome-related carcinomas
Time frame: At 12 months
Change in cell free deoxyribonucleic acid (cfDNA) detectability and mutation profile in the peripheral blood
Time frame: Baseline up to 12 months
Immune response to Nous-209
Tobacco and alcohol consumption will be correlated with the immune response to Nous-209 in trial participants.
Time frame: Up to 12 months
Mismatch repair and/or microsatellite instability status of polyps (and adjacent normal mucosa as control)
Will be assessed using different technologies such as immunohistochemistry, MSI analysis by polymerase chain reaction, or next-generation sequencing.
Time frame: Baseline to 12 months
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