The overall aim of the project is to investigate how bowel habits and nutrition in early life relate to the infant gut microbiome and metabolome from birth to 1 year of age. By unravelling links between these factors in early life, we might be able to identify new putative mechanisms by which diet via microbiota-dependent pathways affects intestinal motility in early life. Furtermore, it will be explored how the development of the gut microbiome associates with the child´s development.
A cohort including 125 mother/infant pairs will be established with the purpose of following the infants' progression in diet, bowel habits, gut and oral microbiome, gut and oral metabolome, physiological and mental development from birth to 12 months of age. This will be possible by longitudinal collection and analysis of biological samples and data from birth until 1 year of age. The primary hypotheses to be tested are that early dietary patterns (composition, complexity, quality, and timing) and bowel habits (stool frequency, consistency, and transit time) are associated with the development of the infant gut microbial composition and metabolism. The secondary hypotheses to be tested are that the development of the infant gut microbial composition and metabolism associate with growth (body weight, length, body mass index, head circumference, body composition), development of the immune system as reflected in the gut (fecal cytokines, immunoglobulins, lipopolysaccharide, antigens) as well as the systemic circulation (blood cytokines, immune cells), host metabolism (blood metabolome, appetite hormones, urine metabolome), and physical development (sleep, motor development, mental development). The tertiary hypotheses to be tested are that the establishment and development of the infant gut microbiome is associated with external environmental factors (household, siblings, maternal diet, maternal fecal microbiome, maternal physical activity, birth conditions, and perinatal factors), and internal factors (infant oral cavity, tooth development, use of pacifier).
Study Type
OBSERVATIONAL
Enrollment
250
Longitudinal study following infant development from birth to 1 year of age
University of Copenhagen, Department of Nutrition, Exercise and Sports
Copenhagen, Denmark
Infant gut microbiome composition
Changes in gut microbiome measured by DNA/RNA sequencing of longitudinal faecal samples from infants
Time frame: Faecal samples collected bi-weekly from birth until 12 months
Infant gut metabolome
Faecal metabolome as assessed by untargeted metabolomics
Time frame: Faecal samples collected bi-weekly from birth until 12 months
Infant bowel habits
Changes in bowel habits as measured by stool frequency, stool consistency and stool colour from birth through to 12 months of age
Time frame: Bi-weekly from birth until 12 months
Infant intestinal transit time
Intestinal transit time estimated by sweet-corn transit time through the gastrointestinal tract
Time frame: 9 and 12 months
Infant dietary patterns
Changes in dietary patterns recorded using food frequency questionnaires
Time frame: Bi-weekly from birth until 12 months
Infant nutrient intake
Assessment of dietary intake by 3-days 24-hour recall
Time frame: 6, 9 and 12 months
Total faecal bacteria
Changes in total faecal bacteria as measured by quantitative PCR and flow cytometry
Time frame: Faecal samples collected bi-weekly from birth until 12 months
Infant body weight
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Changes in body weight from birth measured in gram (g) or kilogram (kg)
Time frame: 0, 1, 3, 6, 9, and 12 months
Infant body length
Changes in body length measured in centimeters (cm)
Time frame: 0, 1, 3, 6, 9, and 12 months
Infant growth
Infant weight and length will be aggregated to determine infant growth status
Time frame: 0, 1, 3, 6, 9, and 12 months
Infant head circumference
Changes in head circumference measured in centimeters (cm)
Time frame: 0, 1, 3, 6, 9, and 12 months
Infant fat stores
Changes in skin folds (triceps \& subscapularis) measured with a skinfold caliper
Time frame: 3, 6, 9, and 12 months
Infant body composition
Changes in body composition as measured by bioimpedance
Time frame: 9 and 12 months
Infant urine metabolome
Changes in urine metabolome as assessed by untargeted metabolomics
Time frame: 2 days, 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, and 12 months