The primary goal of the study is to develop an early (within 4 weeks) combined microbiota/metabolic signature predicting clinical response upon anti-inflammatory treatment in UC patients.
The investigators perform a longitudinal prospective multi-center study for ulcerative colitis (UC) patients with a flare at/and after the time of starting a new treatment and healthy household controls. They will perform intense longitudinal bio-sampling and deep clinical characterization. With this information the aim is to develop a predictive signature regarding the success of a new ly started anti-inflammatory therapy after an UC flare.
Study Type
OBSERVATIONAL
Enrollment
240
Start of standard therapy
Start of standard therapy
Start of standard therapy
University Hospital Bern Inselspital
Bern, Switzerland
RECRUITINGDevelopment of a predictive score regarding success of anti-inflammatory therapy after start of a new treatment in ulcerative colitis
The predictive microbiota signature will be developed using machine learning, considering clinical data, microbiota descriptors, and metabolic changes from day 0 to week 4 (see analysis). Clinical response will be defined as a decrease in the simple clinical colitis activity index (SCCAI) score by ≥3 points 25or to a level of ≤2.5 points 26 at 8 weeks after the start of anti-inflammatory treatment.
Time frame: 4 months
Predicting clinical remission
Assessment of the microbiota/metabolic signature predicting clinical remission (SSCAI \<2.5)
Time frame: 8 weeks
Predicting clinical remission
Assessment of the microbiota/metabolic signature predicting clinical remission (SSCAI \<2.5)
Time frame: 12 weeks
Predicting clinical remission
Assessment of the microbiota/metabolic signature predicting clinical remission (SSCAI \<2.5)
Time frame: 6 months
Predicting clinical remission
Assessment of the microbiota/metabolic signature predicting clinical remission (SSCAI \<2.5)
Time frame: 12 months
Predicting calprotectin reduction
Assessment of the microbiota/metabolic signature predicting a reduction in fecal calprotectin levels
Time frame: 2 weeks
Predicting calprotectin reduction
Assessment of the microbiota/metabolic signature predicting a reduction in fecal calprotectin levels
This platform is for informational purposes only and does not constitute medical advice. Always consult a qualified healthcare professional.
Start of standard therapy
Start of standard therapy
Time frame: 8 weeks
Predicting calprotectin reduction
Assessment of the microbiota/metabolic signature predicting a reduction in fecal calprotectin levels
Time frame: 12 weeks
Predicting calprotectin reduction
Assessment of the microbiota/metabolic signature predicting a reduction in fecal calprotectin levels
Time frame: 6 months
Predicting calprotectin reduction
Assessment of the microbiota/metabolic signature predicting a reduction in fecal calprotectin levels
Time frame: 12 months
Differential microbiota response to therapy: Ozanimod
Sensitivity analysis in the subgroup treated with Ozanimod in regards to differential signatures in the prediction signature
Time frame: 12 months
Differential microbiota response to therapy: TNF-inhibitors
Sensitivity analysis in the subgroup treated with TNF-inhibitors in regards to differential signatures in the prediction signature
Time frame: 12 months
Differential microbiota response to therapy: Vedolizumab
Sensitivity analysis in the subgroup treated with Vedolizumab in regards to differential signatures in the prediction signature
Time frame: 12 months
Differential microbiota response to therapy: Ustekinumab
Sensitivity analysis in the subgroup treated with Ustekinumab in regards to differential signatures in the prediction signature
Time frame: 12 months
Differential microbiota response to therapy: Steroids
Sensitivity analysis in the subgroup treated with Steroids in regards to differential signatures in the prediction signature
Time frame: 12 months
Signature differences between ulcerative colitis and healthy controls
Comparison of microbiota/metabolic signatures between ulcerative colitis patients and controls using clustering and differential abundance analysis
Time frame: 12 months
Metagenomic substrain assessment
Identification of substrains in patient samples using metagenomic sequencing and follow up their persistence/loss over time
Time frame: 12 months
Fatigue assessment
Fatigue severity measured by the fatigue severity scale over time and assessed for reduction after therapy start
Time frame: 12 months
Adverse effects
Assessment regarding potential adverse effects in relation medical therapy by screening questionnaires
Time frame: 12 months